Oxford based Nanopore’s technology achieves genome sequencing landmark
New technique for gene sequencing has produced the most complete human genome ever assembled with a single technology, the nanapore, developed by UK company Oxford Nanopore Technologies.
The miniaturised device has proven its speed and accuracy through the company’s collaboration with an international consortium of researchers and sets the firm up for a major commercial expansion.
Its MinION device is approximately the size of a mobile phone, and performs direct sequencing of long strands of DNA, helping to complement existing technologies which focus on reading short sequences.
The technology works by passing long strands of DNA through a tiny hole (the nanopore) which reads the base pair sequence of the genetic material.
Outlined in the journal Nature Biotechnology, the development demonstrates the incredible progress in gene sequencing over the past two decades.
The miniaturisation and acceleration of the genome sequencing process is leading to a revolution in medicine, leading to ever more personalised therapies for a wide range of diseases including cancer.
The MinION sequencer was developed by Oxford Nanopore in collaboration with Professor Nick Loman of the Institute of Microbiology and Infection at the University of Birmingham, and his PhD student Josh Quick. They recently used the technology in separate research in the field in Africa and the US to trace the spread of infectious diseases Ebola and the Zika virus.
Quick, who was also involved in this latest research, was instrumental in developing the new long read method.
Professor Nick Loman, of the Institute of Microbiology and Infection at the University of Birmingham, said: “Until even just a year ago, it would have been impractically difficult to sequence a whole human genome, but thanks to recent advances and innovations such as nanopore technology we now have the ability to sequence very long fragments of the genome.”
He says assembling a genome is like piecing together a jigsaw puzzle and likens the ability to string extremely long sequences together to finding very large pieces of the puzzle, making the process far less complex.
“One of the most important findings of this research was that, even though the human genome reference was completed or thought to have been completed a while ago, it still contains many missing pieces and we were able to close some of those gaps in the sequence by developing a new method for developing these extremely long reads using nanopore sequencing.”
The research also involved scientists from the universities of Nottingham, East Anglia, California, Salt Lake City, British Columbia and Toronto, as well as the NIH’s National Human Genome Research Institute.