Giant genome study of lung cancer susceptibility leads to new causes being identified
A huge study has identified several new variants for lung cancer risk that will lead to better understanding of the mechanisms involved in lung cancer risk.
Using the OncoArray genotyping platform developed by multiple cancer consortia, a large aggregated genomewide association study, identified new susceptibility loci for lung cancer, the leading cause of cancer mortality worldwide. Although tobacco smoking is the main risk factor, past studies have shown heritability of lung cancer estimated at 18%. Previous association studies have identified several lung cancer susceptibility loci but most of its heritability remains unexplained. This study undertook additional genotyping of lung cancer cases and controls.
The study was co-led by Christopher Amos, PhD, interim Director and Associate Director for Population Sciences, Norris Cotton Cancer Centre; James McKay, PhD, International Agency for Research on Cancer; and Rayjean Hung, PhD, Lunenfeld-Tanenbaum Research Institute and University of Toronto, along with many lung cancer investigators worldwide.
It combined 14,803 cases and 12,262 controls of European descent with existing data, totalling 29,266 cases and 56,450 controls. Researchers identified 18 susceptibility loci achieving genome-wide significance, including 10 new loci. The new loci highlight the striking variation in patterns of risk between lung cancer subtypes adenocarcinoma and squamous lung cancer, with four loci associated with lung cancer overall and six loci associated with lung adenocarcinoma. Variants in several genes related to telomere function were found to play an important role in contribution to adenocarcinoma risk but not squamous carcinoma risk.
Their findings, “Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes” will be published in an upcoming issue of Nature Genetics.
“What is particularly exciting is the magnitude of the study along with the new findings of genes influencing lung cancer which have not previously been reported” said Amos. “This study definitely leads to new ideas about mechanisms influencing lung cancer risk. In particular we identified several novel variants influencing telomere function that impact risk for lung adenocarcinoma. In addition, we found variation around a subunit of the nicotinic receptor that affects lung cancer risk and smoking behaviour and appears to have a primary effect in the cerebellum, which has rarely been implicated in affecting addictive behaviours.”
Further studies will provide a greater understanding of the role of target genes in influencing lung cancer risk, smoking behaviour and smoking effects on brain biology.
Source – ScienceDaily